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bfa.h

#ifndef NST_BFA_H
#define NST_BFA_H

#include <stdio.h>
#include "const.h"

typedef struct
{
      char *name;
      int ori_len, len;
      bit64_t *seq, *mask;
} nst_bfa1_t;

typedef struct
{
      int n;
      nst_bfa1_t **bfa1;
} nst_bfa_t;

#ifdef __cplusplus
extern "C" {
#endif
      nst_bfa1_t *nst_new_bfa1();
      void nst_delete_bfa1(nst_bfa1_t*);
      nst_bfa1_t *nst_load_bfa1(FILE *fp);
      nst_bfa_t *nst_new_bfa();
      void nst_delete_bfa(nst_bfa_t*);
      nst_bfa_t *nst_load_bfa(FILE *fp);
#ifdef __cplusplus
}
#endif

#endif

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